Track Links From Bigwigs

The track_links_from_bw tool prints the UCSC Genome browser links for the supplied bigwig files.

Usage

Usage:

PolTools track_links_from_bw [-h] bigwig_files [bigwig_files ...]

Required Arguments	Description
Bigwig files	Bigwig formatted files

Behavior

track_links_from_bw will print the UCSC genome browser links for the supplied bigwig files. Once these links are in a file, open the file in a text editor to replace the <server> text with the server you are hosting the data.

For example:

$ PolTools track_links_from_bw seq_file-FW.bw seq_file-RV.bw
track type=bigWig visibility=full name='seq file FW' autoScale=on alwaysZero=on windowingFunction=maximum negateValues=off color=0,0,0 altColor=0,0,0 bigDataUrl=<server>/seq_file-FW.bw
track type=bigWig visibility=full name='seq file RV' autoScale=on alwaysZero=on windowingFunction=maximum negateValues=on color=0,0,0 altColor=0,0,0 bigDataUrl=<server>/seq_file-RV.bw